Stem Cell Transplantation |
From the Department of Hematology, Imperial College Faculty of Medicine, Hammersmith Hospital, London W12 0NN, United Kingdom (CF, EN, FD); Institute of Hematology, University of Sassari, Viale San Pietro 12, 07100 Sassari, Italy (CF, ML)
Correspondence: Francesco Dazzi, MD, PhD, Department of Hematology, Imperial College Faculty of Medicine, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK. E-mail: f.dazzi{at}imperial.ac.uk.
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Design and Methods: We assessed the TCR Vß repertoire of Treg in ten patients who had received allogeneic SCT, by using complementarity determining region 3 (CDR3) spectratyping. We developed a new similarity score for the analysis. This score expresses the proportion of Vß with similar profile between Treg and Tconv.
Results: For up to 3 years after SCT the repertoires of Treg and Tconv were characterized by several Vß with different profiles between the two cell subsets, while they were extremely similar in patients more than 3 years post-allografting (similarity score= 0.90 vs. 0.61). The differences observed early after SCT were mainly ascribable to Vß expressing an oligoclonal profile in Tconv but not in Treg.
Interpretation and Conclusions: Our data show that the TCR repertoires of Treg and Tconv are significantly different early post-SCT, while they tend to become identical with full reconstitution. This difference could reflect either a discrepancy in the in vivo reactivity against common antigenic stimulations or be the result of different post-transplant ontogeny.
Key words: T-cell receptor repertoire, regulatory T cells, allogeneic stem cell transplantation.
The diversity of the T-cell receptor (TCR) repertoire is mainly determined by the complementarity determining region 3 (CDR3), which is one of the key players in the context of antigen recognition and major histocompatibility complex restriction. This diversity is due both to extensive rearrangement between V, D and J segments in the TCR
and TCRß genes and to random junctional nucleotide insertions and deletions, which generate CDR3 regions of different lengths.1,2 After allogeneic hematopoietic stem cell transplantation (SCT) the overall TCR repertoire is characterized by a lower diversity and a markedly skewed pattern. The TCR repertoire may start to normalize at about 6 months after transplant but most patients continue to show an abnormal profile until 2–3 years after grafting, with different kinetics between CD4+ and CD8+ cells.3–5
Natural regulatory T cells ( Treg) are a subpopulation of thymus-derived CD4+ T cells which constitutively express the interleukin-2 receptor
chain (CD25).6 They were initially described because of their ability to suppress autoreactive T cells in the periphery.7,8 Treg play a crucial role in the maintenance of peripheral tolerance to self and foreign antigens and modulate susceptibility to autoimmune,9–11 infective12 and neoplastic diseases.13–16
Treg are characterized by a few other molecules apart from CD25, including cytotoxic T-lymphocyte-associated antigen-4 (CTLA-4), glucocorticoid-induced tumor necrosis factor receptor (GITR) and the Forkhead box P3 (FoxP3) gene product.6 In contrast to murine Treg, human Treg are mainly confined within the fraction expressing high levels of CD25,17 which possesses potent immunosuppressive activity and co-expresses FoxP3, whereas the subset expressing intermediate levels of CD25 contains mainly activated T cells with little or no immunosuppressive function.18,19
The role of Treg in the induction of immunological tolerance after SCT has not been fully elucidated. Administration of these cells has a protective effect in murine models of acute graft-versus-host disease (GVHD), related to inhibition of the early expansion of alloreactive donor T cells.20 Such an activity does not seem to interfere with stem cell engraftment or the graftversus-leukemia effect.21 Also the studies conducted in humans have suggested a correlation with different outcomes between GVHD and circulating Treg.22–26 Although, once activated, Treg seem to perform their activity in a non-antigen-specific way,27 they require activation via their TCR to become suppressive.28 A better knowledge of their TCR repertoire in the post-transplant setting would offer relevant information about their ability to react to the massive antigenic stimulation generated in an allogeneic host, which could significantly affect their pattern of reconstitution. Moreover, the requirement for thymic maturation29 could further contribute to altering the repertoire of Treg, as has been found for conventional T cells.3–5 Although it is well known that the repertoire of antigen specificities of Treg in mice is as broad as that of naive T cells,30 only two studies have been conducted in humans.31,32 In normal subjects the TCR repertoire of Treg appears to be similar to that of the CD25– counterpart, thus suggesting the recognition of a similar spectrum of antigens.31 However, no studies focusing on the analysis of the TCR CDR3 repertoire of this cell subpopulation after allografting have been performed so far.
We examined the TCR Vß repertoire of Treg in patients who had received allogeneic SCT for chronic myeloid leukemia (CML), by using CDR3 spectratyping. We concentrated our analysis on the CD4+CD25+ subset expressing high levels of CD25, which contains the vast majority of regulatory T cells,17 as we confirmed by FoxP3 staining. Purified Treg were compared to the CD4+CD25– conventional T (Tconv) counterpart, analyzing the degree of similarity within each Vß subfamily.
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Table 1. Patients characteristics.
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0.02%, indicative of molecular remission. Four of the patients had previously received donor lymphocyte infusions (DLI) for molecular relapse and two of them had achieved molecular remission. Samples were collected an average of 33 months (range 11–70) after the last infusion. Only one patient had active limited GVHD (ocular). None of the patients was or had recently been on systemic steroid treatment. One of the patients was affected by herpes zoster infection and had had a cytomegalovirus (CMV) reactivation 3 months before.
Cell separation
CD4+CD25+ and CD4+CD25-subpopulations were isolated from 40 mL of heparinized peripheral blood samples using a two-step procedure. First, CD4 negative isolation (depletion of CD8, CD16, CD19, CD36, CD56, CD66b and glycophorin A) was performed using Rosette Sep enrichment mixture (Stem Cell Technologies, Vancouver, Canada) according to the manufacturers specifications. Next, CD25 positive selection was carried out with magnetic beads (Dynal Biotech, Oslo, Norway). The obtained CD4+CD25– cells were kept in RPMI media supplemented with 10% AB serum and 1% penicillin and streptomycin. The CD4+CD25+ cells were left overnight in supplemented media and cells and, after spontaneous detachment from the beads, were exhaustively washed in order to separate only cells expressing high levels of CD25. The numbers of CD4+CD25+ and CD4+CD25– cells isolated from each patient ranged between 0.3 and 1.5x106, and 1.1 and 6.9x106, respectively. TRIzol (Invitrogen, Paisley, UK) was added to both cell fraction pellets which were kept at –80°C until RNA extraction.
Cytofluorimetric analysis
The purity of the cell separation was assessed by staining with specific monoclonal antibodies for CD4 and CD25 and with the corresponding isotype controls (BD Pharmingen, Oxford, UK) after both the CD4 negative and the CD25 positive selection. Intracellular analysis of FoxP3 expression was performed using anti-FoxP3 antibody (clone PCH101-FITC from Ebioscience, San Diego, CA, USA). Samples were acquired using a FACSCalibur and analyzed with Cell-Quest software (BD Biosciences).
CDR3 spectratyping
The RNA was isolated from CD4+CD25+ and CD4+CD25– cells as described elsewhere.33 For each sample, complementary DNA was synthesized from the same starting amount of total RNA (0.7 µg), by using Superscript III reverse transcriptase and random hexamer primers (Invitrogen, Paisley, UK) according to the manufacturers instructions. Polymerase chain reaction (PCR) was performed in a volume of 25 µL comprising 1xPCR buffer, 2.5 mM MgCl2, 1 U AmpliTaq Gold (Applied Biosystems, Foster City, CA, USA), 200 µM deoxyribonucleoside triphosphate and 500 nM of one of 24 TCR Vß primers combined with 1 Cß primer conjugated to the fluorescent dye 6-carboxyfluorescein-amino-hexy (6-FAM).34 The sequences of the Vß and Cß primers were described previously.35 The PCR conditions were: 95°C for 10 minutes followed by 36 cycles of 94°C for 20 seconds, 55°C for 40 seconds, 72°C for 40 seconds and a final extension of 72°C for 5 minutes. The PCR fragments were then run on an ABI Prism 3100 Genetic Analyzer and data were collected and analyzed by Gene Mapper ID Software version 3.2 (Applied Biosystems, Foster City, CA, USA).
Spectratyping analysis
Conventional analysis of spectratyping profiles was performed according to the following standard approaches: (i) scoring the number of peaks, in order to determine the overall complexity of the repertoire; (ii) analyzing profiles by peak area and shape, in order to establish the degree of skewing and oligoclonality. Moreover, to quantify the proportion of Vß subfamilies that were similar between Treg and Tconv, we developed a novel analysis method described in the result section.
The overall complexity of the TCR Vß repertoire was determined according to the number of discrete peaks detected per Vß subfamily, each subfamily being graded on a score from 0 to 5. Spectratypes containing five or more peaks were given a score of 5. The overall spectratype complexity score was calculated for both cell subsets in each subject, as the sum of the scores for each subfamily.36
Each spectratype profile was also assessed according to previously described criteria.36 A profile was defined as normal if it showed a Gaussian bell-shaped distribution, with discrete peaks spaced by three nucleotides. Evidence of oligoclonal expansion or skewing was assessed by calculating the relative fluorescence intensity (RI) of each peak (RI = peak area ÷ total peak area). A profile was defined as skewed if: (i) a dominant peak with a RI greater than 35% of the total peak area, corresponding to an oligoclonal profile, was observed; or (ii) two dominant peaks were present and the RI of each peak was greater than 25% of total peak area; or (iii) there were multiple peaks differing from a Gaussian pattern and the RI of the dominant peaks was greater than 25% of total peak area. The percentages of skewed and oligoclonal Vß among the total number of Vß analyzed were calculated.
Statistical analysis
The Students t test was used to assess differences in the complexity score, percentage of skewed or oligoclonal Vß subfamilies and the similarity score between different groups of subjects. Spearmans correlation coefficient was determined to evaluate the correlation between the similarity score and time after SCT. All quoted p-values are two-sided with values <0.05 considered statistically significant.
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Figure 1. FoxP3 is selectively expressed on purified CD4+CD25+ cells. A. Representative profile of the CD4+CD25– subpopulation obtained after CD4+ negative isolation using the Rosette Sep enrichment mixture (depletion of CD8, CD16, CD19, CD36, CD56, CD66b and glycophorin A); B. Representative profile of CD4+ CD25+ purified cells after CD25 positive selection with magnetic beads. The plots in the lower panel show the intracellular expression profile of FoxP3 in the CD4CD25– (C) and CD4+CD25+ (D) subsets (solid lines: FoxP3; dotted line: isotype control).
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Figure 2. Representative CDR3 profiles of the 24 Vß subfamilies in the Treg and Tconv subpopulations. The investigation was carried out 6 months after SCT in a patient who had an active herpes zoster infection and had previously had CMV reactivation. The similarity score was 0.64, with 14 Vß coincident between the two cell subpopulations out of 22 Vß pairs analyzed (Vß 23 and 24 were excluded as not detected in both subsets). Vß 1, 5, 15, 16 and 18 expressed an oligoclonal profile only in the Tconv subset; Vß 20 was oligoclonal only in the Treg subpopulation and Vß 12 and 14 displayed a skewed but non-oligoclonal profile in only one of the cell subsets.
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Table 2. Summary of T-cell receptor repertoire pattern and transplanted related features of the analyzed patients.
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Figure 3. The percentages of both skewed and oligoclonal Vß subfamilies are higher in patients with a shorter time between SCT and the analysis. The figures report the percentages of skewed (A) and oligoclonal (B) Vß in the two cell subpopulations, detected in patients less (R) or more (r) than 3 years after transplantation. Horizontal bars indicate the mean for each group.
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Using this approach, we detected a positive correlation between the similarity score and time elapsed since the SCT (Pearsons correlation coefficient=0.65) (Figure 4A). A higher score was observed in patients more than 3 years after allografting, as compared to those investigated less than 3 years after SCT (mean 0.90 vs. 0.61, p=0.01) (Figure 4B). Remarkably, the similarity score in patients more 3 years after SCT was close to that detected in fresh blood samples of normal volunteers (mean 0.87).
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Figure 4. The TCR repertoires of Treg and Tconv differ early after transplant while they tend to become identical more than 3 years post-SCT. A. The similarity score was calculated in each subject (?) as a ratio between the number of Vß ?subfamilies with a profile coincident between the two cell subsets and the total number of subfamilies available in both cell subpopulations. Pearsons correlation coefficient, calculated for the relation between similarity score and time after SCT, was 0.65. B. Similarity scores in patients less (?) or more (?) than 3 years after transplantation. Horizontal bars indicate the mean for each group.
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Figure 5. Oligoclonal profiles selectively confined to Tconv are more frequent in patients with a shorter time between SCT and the analysis. The frequency of oligoclonal profiles confined to either the Treg (?) or the Tconv (g) subpopulation in patients less or more than 3 years after SCT is represented. The y axis represents the percentage of Vß showing an oligoclonal profile confined to each cell subpopulation among the overall non-similar Vß subfamilies. Horizontal bars indicate the mean for each group.
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Furthermore, the percentages of oligoclonal and skewed Vß as well as the degree of similarity between the two cell subpopulations were not influenced by other factors such as stem cell source, donor type, HLA matching, in vivo T-cell depletion and previous acute or chronic GVHD (data non shown).
Effect of DLI
Previous treatment with DLI was associated with an increase in the amplitude of the TCR repertoire, defined on the basis of a lower percentage of oligoclonal and skewed Vß (data not shown). In the Treg subpopulation, the percentages of skewed Vß in the DLI and non-DLI group were 20% and 39% (p=0.02), respectively, whilst the percentages of oligoclonal Vß in the treated and untreated groups were 7% and 12% (p=ns). In Tconv, the percentages of skewed Vß in patients who did or did not receive DLI were 14% and 40% (p=ns), respectively, whilst the percentages of oligoclonal Vß were 3% and 24% (p<0.05). Previous treatment with DLI was strongly associated with a higher similarity score between the two cell subsets (p=0.005).
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The conventional systems for spectratyping analysis, based on the determination of the overall complexity and skewing of a cell subpopulation, showed essentially similar TCR patterns between Treg and Tconv. However, these methods are inadequate to establish a direct comparison within each Vß subfamily between two cell subsets. We, therefore, developed a new score system, based on a quantification of the proportion of Vß subfamilies with coincident profiles between Treg and Tconv. This analysis revealed significant differences between the two repertoires within the first 3 years after SCT. The differences were mainly due to the frequent presence of Vß expressing an oligoclonal profile in the Tconv but not in the Treg subpopulation. The markedly skewed profile detected in the Tconv subpopulation resembled the features described early after allografting in the CD4+ subset, in which the repertoire reconstitutes within 3 years.3–5 In fact, after 3 years, the TCR Vß profiles of the two cell subsets tended to become identical, paralleling the Tconv subset recovery. The much higher degree of TCR similarity between the two cell subsets observed in patients more than 3 years after SCT as compared to those with a more recent transplant could reflect the kinetics of reconstitution of the whole T-cell compartment. On the other hand, the marked differences between the Tconv and Treg repertoires described in recipients early after SCT seems to be ascribable to a reduced degree of skewing confined to the Treg subset. The repertoire amplitude and the degree of similarity between the two cell subsets were increased in patients treated with DLI, thus corroborating its possible contribution to the re-establishment of the TCR repertoire.42,43
Although the intrinsic in vitro anergic features of Treg 44 are fully consistent with the observed discrepancy, these cells have been shown to proliferate actively in vivo after antigenic stimulation,45,46 especially in a lymphopenic environment.22,47 However, from our data it appears that, in the presence of a massive antigenic stimulation, such as the one generated in an allogeneic host, there is selective expansion of Tconv rather than Treg, producing oligoclonal profiles in their repertoire. On the other hand, the reduced degree of oligoclonality observed in the TCR repertoire of Treg, when compared to Tconv, does not necessarily mean that Treg are impaired or that they have not been activated. In fact, the detection of a less restricted repertoire could be an expression of their ability to exert a suppressive effect in a non-antigen-specific manner,27 notwithstanding the requirement of activation via TCR.28 It is worth noting that intereleukin-248 as well as Toll-like receptor 2 ligands of bacterial or fungal origin,49 both of which can be largely present after SCT, are also important mediators of Treg activation. Another factor that might explain the reduced similarity between the TCR repertoires of the two subpopulations early after allografting is a different origin. Treg are positively selected in the thymus as a consequence of an interaction between a self-peptide and their TCR.29 The detection of oligoclonal patterns, suggestive of antigen-driven proliferations, in Tconv but not in Treg could imply that the TCR repertoire is shaped by a peripheral antigen-induced expansion in Tconv and by a broader thymic-dependent selection in Treg.
Murine models20 as well as clinical studies22 suggest that Treg of donor origin are primarily involved in transplantation tolerance. Interestingly, on one occasion we had the possibility to compare a patients TCR profile 52 months after SCT with that of her donor (data not shown). We observed that the patients repertoire was fully reconstituted, with a Gaussian profile in all the Vß subfamilies, except for an oligoclonal pattern in Vß 20. The donors repertoire was nearly identical, including the Vß 20, which showed the same oligoclonal profile. Noteworthy, the patient had received DLI 11 months before, which had produced a cytogenetic remission.
In conclusion, our data show that the TCR repertoires of Treg and Tconv exhibit significant differences early after SCT, which are mainly ascribable to V? subfamilies expressing an oligoclonal profile in the Tconv but not in the Treg subpopulation. The TCR V? profiles of the two subsets tend to become identical with full reconstitution. These different patterns may reflect a different in vivo reactivity against common antigenic stimulations or result from a disparity in post-transplant T-cell ontogeny.
CF performed the research, analyzed the data and wrote the manuscript; EN performed the research and provided intellectual input and critical feedback to the manuscript; ML provided intellectual input and critical feedback to the manuscript; FD designed the research, supervised all aspects of the study and reviewed the manuscript.
The authors reported no potential conflicts of interest.
Funding: This work was supported by the Leukaemia Research Fund. Claudio Fozza is the recipient of the fellowship "Master and back TS 07" offered by the Region of Sardinia.
Received for publication September 15, 2006. Accepted for publication January 9, 2007.
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