Original Articles |
1 INSERM U790, Villejuif, France
2 Univ Paris-Sud, Villejuif, France
3 AP-HP, Hôpital de Bicêtre, Le Kremlin-Bicêtre, France
4 Centre de référence des maladies génétiques de lérythrocyte et de lérythropoïèse, Hôpital Bicêtre, Université Paris XI, Le Kremlin-Bicêtre, France
5 AP-HP, Hôpital Henri-Mondor, Créteil, France
6 Université Paul Sabatier, Laboratoire de Biologie Moléculaire des Eucaryotes, Toulouse, France
7 CNRS, UMR5099, Toulouse, France
8 AP-HP, Hôpital Saint-Louis, Paris, France
9 New York Blood Center, New York, NY, USA and
10 AP-HP, Hôpital Robert-Debré, Paris, France
Correspondence: Lydie Da Costa, MD, PHD, Service, dHématologie biologique, Hôpital, Robert Debré, 48 boulevard Sérurier, 75019 Paris, France. E-mail:lydiedacosta{at}free.fr/lydie.dacosta{at}rdb.aphp.fr
|
|
|---|
Design and Methods: To define the mechanistic basis for this variability better, we studied a large number of mutant proteins and characterized both RPS19 expression level using a specific antibody against RPS19 and RPS19 subcellular localization after transfection of Cos-7 cells with various green fluorescent protein-RPS19 mutants. To investigate the role of the proteasome in RPS19 degradation, we examined the effect of various proteasome inhibitors, namely lactacystin, MG132, and bortezomib on RPS19 expression and subcellular localization
Results: We found two distinct classes of RPS19 protein defects in Diamond-Blackfan anemia based on the stability of the mutant proteins: (i) slightly decreased to normal levels of expression and normal nucleolar localization and (ii) markedly deficient expression and failure to localize to the nucleolus. All the proteasome inhibitors tested were able to restore the expression levels and normal subcellular localization of several unstable mutant proteins.
Conclusions: Our findings demonstrate an important role for the proteasomal degradation pathway in regulating the expression levels and nucleolar localization of certain mutant RPS19 proteins in Diamond-Blackfan anemia.
Key words: RPS19, Diamond-Blackfan anemia, nucleolar localization, proteasome inhibitors, bortezomib.
|
|
|---|
A hot spot of RPS19 gene mutations is located between codon 52 and codon 62.10 No correlation between the genotype and the clinical presentation has been established. The molecular mechanisms by which RPS19 mutations cause blockade of erythropoiesis have yet to be defined. Unfortunately, animal models have thus far failed to provide significant insights into this problem. Homozygous knock-out RPS19–/– mice died in utero while heterozygote RPS19+/– mice did not exhibit any hematologic or other abnormalities.13 However, knock- down of RPS19 in human bone marrow or cord blood CD34+ cells using siRNA-lentivirus reproduced the blockade in erythroid cell proliferation and differentiation observed in DBA14 implying that RPS19 plays a functional role in regulating erythropoiesis. Importantly, some recent studies characterized DBA as a disease of ribosome biogenesis and, specifically, of maturation of the pre40S subunit.15–18
We previously showed that both endogenous and green fluorescence protein (GFP)-fused RPS19 localize to the nucleoli of Cos-7 fibroblasts.19 We also reported variability in the levels of expression and subcellular localization of a subset of RPS19 mutant proteins. To better define the mechanistic basis of this variability, in the present study, we examined the expression levels and nucleolar localization of a large number of mutant RPS19 proteins.
|
|
|---|
|
View this table: [in a new window] [Download PPT slide] |
Table 1. Description of the 13 patients affected by Diamond-Blackfan anemia.
|
![]() View larger version (19K): [in a new window] [Download PPT slide] |
Figure 1. Representation of the patients mutations: the RPS19 protein sequence is shown from the initiation methionine to the last amino acid, the histidine. The N-and C-termini described previously as NoS (nucleolar localization signal) are represented as dark gray boxes, encompassing the first 15 amino acids and the glycine 120 to the asparagine 142, respectively. The hot spot of mutations identified in Diamond-Blackfan anemia from the tryptophan 52 to the arginine 62 is shown as a light gray box. Arrows indicate the missense mutations studied: Trp52Cys, Gly120Ser, and Leu131Pro. The 24del18 mutation deletes amino acids 9 to 14 without any frameshift of the RPS19 protein sequence. InsAG36, InsG238, and 390del2 are responsible for a frameshift beginning with the amino acids, 12, 80 and 130, respectively, resulting in stop codons at amino acids 29, 153, and 151, respectively. All the nonsense mutations, Trp33stop, Try48stop, Arg56stop, Met75stop, Arg94stop, and Ala100stop lead to a premature stop codon and variously truncated RPS19. All the insertion and nonsense mutations suppress the entire C-terminal NoS and the 390Del2 mutation deletes amino acids 131 to 142 in this C-terminal region.
|
Immunoprecipitation
Cos-7 cells from culture dishes were washed twice with phosphate-buffered saline (PBS) 12 to 18 h after transfection. The lysis buffer was added to the dish. After 30 min of cell lysis on ice, the cell suspension was centrifuged and then 100 µL of protein G agarose beads were added to the supernatant for 1 h for pre-clearing at 4°C. Following centrifugation, the supernatant was mixed with the agarose beads coupled to 5–10 µg of specific rabbit IgG antibody against ubiquitin (Calbiochem) and incubated overnight at 4°C. After centrifugation and washes, the beads were suspended in 100 µL of 2X SDS-PAGE denaturing buffer and dithiothreitol (DTT). The samples were boiled for 10 min and stored at –80°C until western blot analyses could be performed.
Immunoblotting
Cos-7 cells were immunoblotted as previously described.19 The membrane with transferred proteins was incubated with an antibody against RPS19 or an antibody against actin (clone C4) (ICN Biomedicals) or an antibody against GFP (Roche) diluted at 1:1000 or an antibody against histone deacetylase 1 (HDAC1) (Santa Cruz Biotech) diluted at 1:500. The antibodies against RPS19 and actin were used at the concentrations previously described.19 The specific protein band was revealed by secondary antibodies coupled with horse-radish peroxidase.19 A goat anti-rabbit antibody (Vector labs) was diluted 1:1000 for the detection of HDAC1.
Immunofluorescence microscopy
Cos-7 cells, either untransfected or transfected with pEGFP-C3 constructs, were processed as previously described19 and viewed using an Eclipse E600 inverted microscope (Nikon, Kanagawa, Japan). Images were acquired using CoolSNAP 1.2 software (Roper Scientific, Inc.). We analyzed the distribution of GFP-RPS19 fusion proteins in different subcellular compartments by counting the percentage of cells exhibiting staining in the different compartments: the nucleus, the cytoplasm, and nucleoli. Nucleolar localization was evaluated in 200 transfected cells and three independent transfections were carried out with each construct.
Proteasome inhibition
The proteasome of Cos-7 cells was inhibited by classic proteasome inhibitors: lactacystin, MG132 (Calbiochem) or bortezomib (Janssen-Cilag, Millennium). Cells were incubated in the DMEM culture medium with lactacystin or MG132 at 10 µmol/L or bortezomib at 2.5 ng/mL for 8 hours and then transfected with various RPS19 constructs. Twelve hours after transfection, cells were collected for immunoblot or immunofluorescence analysis.
Cell fractionation
After treatment of Cos-7 cells with or without bortezomib and transfection with GFP-wild type or mutant RPS19, the cells were treated for 10 min with 100 µg/mL cycloheximide. Cell fractionation was then performed as previously described.20
|
|
|---|
![]() View larger version (20K): [in a new window] [Download PPT slide] |
Figure 2. RPS19 nucleolar localization analyses: we analyzed the subcellular distribution of RPS19 after transfection of Cos-7 cells with GFP-wild type and various mutant RPS19. The figures shown here are merged fields of DAPI+FITC staining for GFP –24del18, –Trp52Cys, –Gly120Ser, Leu131Pro, –Met75stop RPS19 mutants. While GFP-24del18, –Trp52Cys, and –Gly120Ser RPS19 mutants localized in Cos-7 cell nucleoli, GFP-Leu131Pro and Met75stop failed to localize to the nucleoli. Arrows indicate the nucleoli in the cell. Original magnification: x63.
|
![]() View larger version (18K): [in a new window] [Download PPT slide] |
Figure 3. Analysis of the subcellular distribution of various mutant RPS19 fused to GFP in transfected Cos-7 cells: the nucleolar partitioning of 13 mutant RPS19 fused to GFP was compared with that of human WT RPS19. The percentage of cells showing nucleolar localization was quantified by examining 200 transfected cells from each transfection. The data shown are averages from three independent experiments.
|
![]() View larger version (35K): [in a new window] [Download PPT slide] |
Figure 4. Differences in levels of expression of normal and mutant RPS19 proteins: lysates of Cos-7 cells transfected with different GFP fusion protein constructs including GFP alone, GFP-WT RPS19, and GFP-mutant RPS19-Gly120Ser, -Leu131Pro, -Trp52Cys and -24del18 (A), GFP-mutant RPS19-insAG36, and -insG238 (B), GFP-mutant RPS19 -Trp33stop, -Tyr48stop, -Arg56stop, -Met75stop, -Arg94stop, and -Ala100stop (C). Immunoblots were probed with a chicken polyclonal anti-RPS19 antibody (0.05 µg./L). The Leu131Pro, insAG36, insG238 and all the nonsense mutations tested, which impaired RPS19 nucleolar import, were consistently associated with a dramatic decrease in RPS19 expression (panel A, lane 5; panel B lanes 4–5; panel C, lanes 4–9). Endogenous RPS19 shown at the bottom of the membranes, confirms the equivalent amount of total proteins loaded into each lane. Western blots with an antibody against human β-actin (A', B' and C') also confirmed equivalent amounts of protein loading. Molecular weight standards are shown at the side of the blots.
|
Some RPS19 mutations result in dramatically reduced levels of protein expression and abnormal subcellular localization
The Leu131Pro mutant failed to localize to the nucleoli and was present predominantly in the cell cytoplasm (Figure 2). We noted nucleolar localization in less than 1% of transfected cells (Figure 3). Importantly, western blot analysis showed a dramatic decrease in the level of expression of Leu131Pro mutant RPS19 (Figure 4, Panel A, lanes 4–5). Altered subcellular localization and a marked decrease in levels of protein expression were also features of nine other premature stop codon mutations that led to the deletion of varying lengths of the C-terminal region of the protein. In six cases, nonsense mutations led to premature termination (Trp33stop, Tyr48stop, Arg56stop, Met75stop, Arg94stop, Ala100stop). In two cases, insertions and in one case, a deletion led to a change in the reading frame resulting in a truncated protein, with altered C-termini. In all these nine cases, there was a significant failure of the mutant proteins to localize to the nucleoli (Figures 2 and 3), with nucleolar localization ranging from less than 1% in six cases to 7, 10, and 13%, in the other three. Importantly, the levels of expression of these nine mutant proteins were dramatically reduced compared to the expression of wild type protein. No mutant protein could be detected in the western blots for any of these nine mutants (Figure 4).
The effect of proteasome inhibitors on expression evels and on nucleolar localization of mutant RPS19 proteins
We documented that endogenous RPS19 as well as the wild type and mutant RPS19 proteins fused to GFP were ubiquitinated, a feature of most proteins targeted for proteasomal degradation (Figure 5A). We examined the ability of proteasome inhibitors to restore the expression levels of 15 RPS19 mutant proteins (13 identified in the present study and the two other that we hadpreviouslyreported,19 Val15Pheand Gly127Glu) (Table 1 and Figure 1). A key finding is that two different proteasome inhibitors restored the expression levels of seven of these mutant proteins, which were poorly expressed in Cos7 cells. The expression levels of Val15Phe, Gly127Glu, Leu131Pro and of truncated Arg94stop, Ala100stop, insG238 and 390del2 RPS19 were significantly higher following proteasome inhibition by lactacystin or MG132 (Figure 5C, data not shown for the 390del2 RPS19). In addition to restoring protein expression levels, the proteasome inhibitors also restored nucleolar localization of these seven mutant proteins (Figure 5B, data not shown for the 390del2 RPS19). In marked contrast, proteasome inhibition had no effect on either the expression or subcellular localization of truncated insAG36, Trp33stop, Tyr48stop, Arg56stop, and Met75stop RPS19 proteins (data not shown). Thus, proteasome inhibitors are effective in restoring both RPS19 protein expression levels and nucleolar localization as long as the truncated proteins contain more than 80 amino acids, but fail to do so when the mutated RPS19 contains less than 80 amino acids. It should be noted that the wild type RPS19 also undergoes proteasomal degradation but to a much lesser extent than the mutant proteins. This could be a reflection of the physiological degradation of wild type RPS19 in cells in steady state.
![]() View larger version (28K): [in a new window] [Download PPT slide] |
Figure 5. (A) RPS19 is an ubiquinated protein: transfection of Cos-7 cells with GFP wild type and mutant RPS19 followed by immunoprecipitation with an antibody against ubiquitin and immunoblotting with the anti-RPS19 antibody showed the ubiquination of endogenous, GFP-wild type and various RPS19 mutants. NT: non-transfected cells; GFP-WT: GFP-wild type; GFP-mutant RPS19: GFP-Val15Phe, -Leu131Pro, -Gly127Glu, –InsG238, -Ala100stop, -Arg94stop. The GFP-WT no IP lane shows RPS19 staining after transfection of GFP-WT but without ubiquitin immunoprecipitation. Molecular weight standards (MW) are shown at the side of the blots. (B) Effects of lactacystin on RPS19 nucleolar localization: the merged fields of DAPI+FITC staining for GFP –Val15Phe, -Gly127Glu, -Leu131Pro, -insG238, -Arg94stop and –Ala100stop RPS19 mutants are shown. Lactacystin restored the localization of all the GFP-RPS19 mutants to the nucleoli. Similar results were obtained with MG132 (data not shown). Arrows indicate the nucleoli in the cell. Original magnification: x63. (C) Effect of lactacystin on RPS19 expression levels: lactacystin treatment increased the levels of expression of all mutant proteins. Lanes marked (–) are without lactacystin and lanes marked with (+) are with lactacystin. Similar results were obtained with MG132 (data not shown). Molecular weight standards (MW) are shown at the side of the blots.
|
![]() View larger version (31K): [in a new window] [Download PPT slide] |
Figure 6. (A) Effects of bortezomib on RPS19 expression level: bortezomib treatment increased the levels of expression of all mutant proteins (GFP-Val15Phe-, -Gly127Glu-, -Leu131Pro-, –Ala100stop-, -Arg94stop-, and -insG238-RPS19). Lanes marked (–) are without bortezomib and lanes marked (+) are with bortezomib. Molecular weight standards (MW) are shown at the side of the blots. (B) Effects of bortezomib on RPS19 nucleolar localization; merged fields of DAPI+FITC staining for GFP –Val15Phe, -Gly127Glu, –Leu131Pro, -insG238, -Arg94stop and –Ala100stop RPS19 mutants are shown. Bortezomib restored the nucleolar localization of all the GFP-RPS19 mutants. Arrows indicate the nucleoli in the cell. Original magnifications x 63. (C) Cell fractionation with or without bortezomib: western blot analyses of the subcellular localization of GFP-WT and GFP-mutant RPS19 (GFP-Val15Phe, -Gly127Glu, –Leu131Pro, -Arg94stop, -Ala100stop, and –InsG238) after treatment of the cells with (+) or without bortezomib (–). The top two panels show cytoplasmic fractions and the bottom two panels show nucleoplasmic fractions. Histone deacetylase (HDAC1) was chosen as a nucleoplasm protein control. Bortezomib restored RPS19 nucleoplasmic localization in all the mutants tested.
|
|
|
|---|
In the present study, we identified two types of mutations in the RPS19 gene, leading to two different phenotypes in vitro: (i) mutations associated with slightly decreased to normal levels of expression and a normal nucleolar localization and (ii) mutations which exhibit a dramatic decrease in RPS19 expression level and a significant alteration in nucleolar localization. The data presented here are in very good agreement with those of a recently published study of a large number of RPS19 missense mutants expressed in HEK293 cells.30 In addition, we show that RPS19 proteins with premature stop codons are degraded by the proteasome, which indicates that nonsense-mediated decay is not the only mechanism operational in these mutants. The fact that proteasome inhibitors fail to stabilize RPS19 mutants with fewer than 80 amino acids may be due to major instability of these mutants, or because nonsense-mediated decay is more efficient for these short forms.
Recent elucidation of the crystal structure of the homolog of RPS19 in archeaon Pyrococcus abyssi31 provides an explanation of these functional data. The mutations associated with a slight decrease in RPS19 expression levels and normal nucleolar localization are all accessible residues clustered within or around alpha helix 3 located in the central position in the structure and thereby impairing the function of the protein without altering its overall folding (class II mutations).31 In contrast, mutations that exhibit a dramatic decrease in RPS19 expression levels alter structural residues affecting the folding of the protein and hence its stability (class I mutations).31 Thus, our functional data show a remarkable correlation with RPS19 structure.
Another major finding of the present study is that impaired nucleolar localization and decreased expression of RPS19 are tightly linked. We suggest that these RPS19 mutants fail to localize into the nucleoli either because the mutation impairs their ability to translocate to the nucleoli and hence they are degraded or because the mutant protein is unstable and rapidly degraded by the proteasome. While we are unable to distinguish the relative contributions of these two mechanisms, our findings with proteasome inhibitors favor the second hypothesis since both RPS19 expression level and nucleolar localization are rapidly restored by proteasome inhibitors. These results imply that proteolysis of the mutant protein is a hallmark of these identified mutations. We previously described two regions involved in RPS19 nucleolar localization, one in the first 15 amino acids and the second one encompassing the Gly120 to the Asn 142 in the C-termini.19 In the light of the data presented here, it is rather likely that deletion of either one of these domains induces protein instability, therefore hampering accumulation in the nucleolus.
The proteasome is predominantly localized in the cytoplasm but is also present in the nucleus. Recently, Lam et al.32 showed proteasomal degradation of normal ribosomal proteins in the nucleus. We could thus hypothesize that RPS19 mutants can be effectively translocated to the nucleolus and then degraded in the nucleoplasm. Further experiments using mass-spectrometry would be needed to define where exactly the proteasomal degradation of RPS19 mutants occurs in cells. Using mass-spectrometry-based organellar proteomics and stable isotope labeling, in yeast and HeLa cells, RPS19 was one of the first nucleolar proteins whose quantitative changes in response to metabolic inhibitors, including MG132, were analyzed.32,33 RPS19 decreases two-fold in the nucleoli after actinomycin D treatment and increases two-fold in the nucleoli following MG132 treatment. It was suggested that there may be "a novel regulatory link between ribosome biogenesis and protein degradation pathways, acting to balance rates of protein synthesis and breakdown".33 The understanding of the mechanisms that regulate the trafficking of RPS19 in and out of the nucleolus and the role of this protein in the regulation of cell proliferation and differentiation may provide important clues for understanding the pathophysiology of DBA.
The fact that protein levels of some of the mutants can be restored by proteasome inhibitors raises the attractive possibility that these mutant proteins may still be functional. Angelini et al.30 did not find any of the RPS19 mutants that they studied in association with cytoplasmic ribosomes, even after proteasome inhibition. However, this experiment may be difficult to interpret since inhibition of the proteasome alters ribosome biogenesis by itself,34 which may prevent efficient incorporation of the mutants into pre-ribosomes. In contrast, several class I RPS19 mutants with mutations equivalent to V15F and A62S were found to be incorporated into mature ribosomes and to partially complement shutdown of endogenous RPS19 expression in yeast.18,31 Although these mutations may have a weaker impact on yeast RPS19 when compared to the human protein, these results support the hypothesis that stabilized class I mutants could be functional.
AC performed all the experiments; LDC, JD, and AP analyzed the sequence of the RPS19 gene; TL, LDC, GT and IM are in charge of the French DBA registry; OW-B provided the bortezomib reagent. CH, HM and VC performed cell culture and cell fractionation experiments; P-EG critically revised the manuscript; LDC directed the research work; NM and LDC designed the research, analyzed the data, and wrote the article. The authors reported no potential conflicts of interest.
Received for publication March 6, 2008. Revision received May 26, 2008. Accepted for publication June 23, 2008.
|
|
|---|
Related Article
This article has been cited by other articles:
![]() |
I. Dianzani and F. Loreni Diamond-Blackfan anemia: a ribosomal puzzle Haematologica, November 1, 2008; 93(11): 1601 - 1604. [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||