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Acute Promyelocytic Leukemia |
1 Hospital Universitario, Salamanca
2 Centro de Investigación del Cáncer-IBMCC (USAL-CSIC) of Salamanca
3 Complejo Hospitalario de Leon
4 Hospital Central de Asturias, Oviedo
5 Hospital General de Segovia
6 Hospital Rìo Hortega, Valladolid, Spain
7 Hospital Miguel Servet, Zaragoza, Spain
Correspondence: Ramon Garcia-Sanz, MD, PhD, Department of Hematology, University Hospital of Salamanca, Paseo de san Vicente, 58-182, Salamanca 37007 Spain. E-mail:rgarcias{at}usal.es
| ABSTRACT |
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Design and Methods: We studied PRAME expression at diagnosis using real-time quantitative polymerase chain reaction in 125 patients with acute promyelocytic leukemia enrolled in the Spanish PETHEMA-96 (n=45) and PETHEMA-99 (n=80) clinical trials. In addition, PRAME expression was evaluated as a marker of disease activity in 225 follow-up samples from 67 patients with acute promyelocytic leukemia.
Results: At diagnosis, PRAME expression in patients with acute promyelocytic leukemia was significantly higher (p<0.001) than in patients with non-M3 acute myeloid leukemia (n=213) and in healthy controls (n=10). Furthermore, patients with acute promyelocytic leukemia with high PRAME expression had a favorable outcome. Thus, the 5-year relapse-free survival was better in patients with >100-fold PRAME expression (86% vs. 74%; p=0.03), and this cut-off established two sub-groups with different relapse-free survival rates among patients with a white cell count <109/L (5-year relapse-free survival 94% vs. 80%, p=0.01). This effect was similar in patients with a white cell count >109/L, although differences were not statistically significant. In multivariate analysis, white cell count >109/L (p<0.001), bone marrow blasts >90% (p=0.001), and PRAME expression <100-fold (p=0.009) were associated with short relapse-free survival. Samples at remission showed PRAME levels similar to those in normal controls while samples at relapse over-expressed PRAME again. Furthermore, 12/13 samples collected within the 6-month period preceding relapse showed a >10-fold increase in PRAME expression levels.
Conclusions: Low PRAME expression defines a subgroup of patients with acute promyelocytic leukemia with a short relapse-free survival. This marker could be useful as a secondary marker for monitoring patients with acute promyelocytic leukemia.
Key words: acute promyelocytic leukemia, PRAME, real-time quantitative PCR.
| Introduction |
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In solid tumors, PRAME overexpression is associated with a more advanced tumor stage, increased probability of metastasis and a poor clinical outcome.1,2,10,11 By contrast, preliminary data suggest that high PRAME RNA levels correlate with good prognosis and prolonged survival in both adult4 and childhood AML,5 as well as pediatric acute lymphoid leukemias.8 Furthermore, this high expression has been associated with the presence of favorable translocations, such as t(8;21) and t(12;21).3,4 Given this particular tumor-specific expression, several authors have suggested that PRAME could be useful as a target for monitoring minimal residual disease (MRD) in acute leukemias.3–6,12–14 In the largest published series of MRD evaluation, Steinbach et al.12 showed, in 26 cases of childhood non-M3 AML, that PRAME expression decreased to control levels in patients who achieved a continuous complete remission. In addition, a rise in the expression level was observed in patients who eventually relapsed.12
Although some reports found higher PRAME expression when the t(15;17) was present, these data were based on small numbers of patients with acute promyelocytic leukemia (APL).3,4,13 The clinical impact of PRAME on the outcome of patients with APL has not, however, been evaluated yet. The aim of this study was to analyze PRAME expression and its relationship to survival and prognosis in a large series of uniformly treated APL patients, as well as to evaluate its potential value as a surrogate marker for MRD investigations.
| Design and Methods |
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10x109/L and/or platelet count <40x109/L]. The diagnosis of APL was confirmed according to standard criteria.16 After obtaining written consent, bone marrow samples were taken from ten healthy donors and used as controls for gene expression analysis. Additionally, 213 non-M3 bone marrow samples taken at diagnosis were analyzed as a reference group for PRAME expression. Informed consent to the use of biological samples and clinical data was obtained from all patients.
RNA extraction and cDNA synthesis
Total RNA was obtained from unfractionated bone marrow samples (taken at diagnosis with >70% blast cells) using the acid guanidium thiocyanate-phenol chloroform extraction method, as previously described.17 Reverse transcription was performed using the Europe against Cancer Group (EAC) protocol.18 Briefly, 1 µg of total RNA was added to a 20-µL volume containing random hexamers as primers and 100 U of SuperScript RNase H reverse transcriptase (Invitrogen, CA, USA). The mixture was incubated at 42°C for 60 min, followed by 3 min at 99°C and 2 min at 4°C. Aliquots were stored at –80ºC prior to further analysis.
Quantification of PRAME expression
PRAME expression was quantified using the 7900 HT Fast Real-Time PCR System and TaqMan Gene Expression Assays (Applied Biosystems, Foster City, CA, USA) according to the manufacturers instructions. The cycle number at which the reaction crossed an arbitrarily placed threshold (CT) was determined and the relative expression of PRAME regarding a housekeeping gene (ABL1), used as a control of RNA quality, was calculated using the equation 2–
Ct where
CT = CTPRAME – CTABL1 and 
CT=
CTsample –
CTHealthy BM (median).19 In order to carry out the 
CT correction, we selected the median
CT value obtained in bone marrow samples from ten healthy donors. PRAME expression values were thus expressed as relative units (RU), where one RU is equivalent to the PRAME expression of the healthy donor bone marrow sample with the median
CT value. The assay ID were: ABL1, Hs00245445_m1, and PRAME, Hs00196132_m1.
Quantification of the PML-RARA fusion gene
Absolute quantification of PML-RARA transcripts was carried out by real-time quantitative polymerase chain reaction (RQ-PCR) using an ABI PRISM 7700 DNA Sequence Detection System (Applied Biosystems, Foster City, CA, USA) according to the EAC protocol.18,20 PML-RARA transcript copy numbers were assessed in 5 µL (100 ng) of cDNA, using commercial plasmids (IpsoGen Laboratories, Marseille, France) to construct the standard curve. The housekeeping gene Abelson-1 (ABL1) was selected as a control gene for RNA expression as previously reported.21 A non-amplification control, containing RNA from a healthy donor and a non-template control with distilled water instead of human cDNA were included in each assay. All samples were analyzed in triplicate and results are reported according to EAC guidelines as the normalized copy number, which is derived by multiplying the PML-RARA copy number/ABL1 copy number ratio by 10000.
Detection of FLT3 mutation
FLT3-ITD was examined by amplification of the jux-tamembrane region spanning exons 14 and 15 with primers 11F and 12R, using qualitative PCR22 and Genescan analysis.23 The up-stream primer in this latter approach was fluorescently labeled with 6-FAM to allow sizing of all products (Model 3130 Genetic Analyzer, Applied Biosystems).
Statistical analysis
All tests were carried out using the SPSS 15.0 program (SPSS, Chicago, IL, USA). For univariate analyses, the
2 and Students t tests were performed to evaluate factors associated with PRAME expression. Relapse-free survival (RFS) was defined as the time between the achievement of complete remission and the time of the relapse or the last follow-up. Overall survival was defined as the time between the moment of diagnosis and death or the last follow-up. The probabilities of RFS and overall survival were calculated using the Kaplan-Meier method and compared using the log-rank test.24 RFS was estimated taking hematologic relapse as a censored event. Continuous variables were dichotomized according to either the median value or relapse-risk criteria described by Sanz et al.37 The impact of multiple predictor variables on RFS was assessed by multivariate analysis according to the Cox regression model.25
| Results |
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Ct method used in our study for evaluating PRAME expression was indeed applicable.
PRAME expression in APL at diagnosis
PRAME expression was assessed in bone marrow samples taken at diagnosis from 125 APL patients treated within PETHEMA multicenter trial protocols. For the 2–
Ct method we used bone marrow samples from ten healthy volunteers as a calibrator. The median
CT (CTPRAME-CTABL) value in healthy samples was 12.06 (range, 9.51 to 15.75). For APL samples, the median
Ct value was 4.48 (range, –1.75 to 11.63). Accordingly, the median PRAME expression was 1.0 RU (range, 0.1–5.8) for healthy donors and 191.0 RU (range, 1.3–14301.6) for APL patients. As a reference, we also tested PRAME levels in 213 cases of newly diagnosed AML without t(15;17). In these latter patients, PRAME expression levels were significantly lower than in the APL cases (median value of 10.1 RU; range, 0.1–59531.2; p<0.001) (Figure 1). It is worth noting that the median PRAME value of non-M3 AML samples corresponds to the 15th percentile of the APL samples.
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PRAME expression according to response to therapy and relapse status
Of the 125 evaluated APL patients, 111 (88.8%) achieved complete remission after induction treatment (median 34 days after diagnosis; range, 22–88 days). The remaining 14 patients died during induction treatment due to hemorrhage (n=7), therapy-related infection (n=6) or ATRA syndrome (n=1) at a median of 14 days after diagnosis (range, 1–29 days). Regarding PRAME expression, no statistically significant difference was observed between patients who achieved complete remission (median 184.3 RU; range, 1.3–14301.6) and patients who died during induction therapy (median 460.6 RU; range, 7.0–11764.8; p=0.502).
Among patients achieving complete remission, we investigated PRAME RNA levels in order to discern whether these levels were different between patients who relapsed later (n=16) and those who did not (n=95). Interestingly, patients in continuous complete remission had significantly higher PRAME expression (median 207.6 RU; range, 1.3–14301.6) at diagnosis than had those patients who eventually relapsed (median 39.8 RU, range 1.5–5060.1; p=0.05).
Relapse-free survival and overall survival
When we compared the RFS of patients with low and high PRAME expression levels, defined according to the threshold previously mentioned (100 RU), we observed that the latter group of patients had a significantly longer RFS (RFS rates of 86% versus 74% at 5 years, p=0.031; Figure 2A). We evaluated the impact of the main biological and clinical features of patients on RFS using the Kaplan-Meier model as a univariate approach (Table 2). Multivariate analysis for RFS was carried out including the parameters with significant differences in the univariate analysis: WBC counts, PRAME expression level and bone marrow blasts. Only two of these variables were selected as having an independent prognostic value for a shorter RFS: WBC >10x109/L (p=0.003) and PRAME expression <100 RU (p=0.011).
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10x109/L. In patients with low WBC, only PRAME expression (100 RU cut-off) could define two subgroups with significantly different RFS at 5 years (80% vs. 92% in low and high PRAME expression group, respectively; p=0.032; Figure 3A). The Kaplan-Meier curves were not statistically significantly different between subgroups by any of the other clinical and biological parameters. There were few patients (n=22) in the group with a high WBC count, so it is not surprising that there were no parameters associated with statistically significant differences in risk of relapse. Regarding the 100 RU cut-off, the two subgroups showed different RFS curves, but the differences were not statistically significant (p=0.231) (Figure 3B).
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PRAME vs. PML-RARA fusion transcript expression
We analyzed 225 follow-up bone marrow samples from 67 patients who achieved complete remission: 53 patients who maintained a continuous complete remission and 14 patients who eventually relapsed. The follow-up for patients remaining in complete remission (median 3.13 years, range 0.5 to 10.6) was virtually the same as the follow-up for patients who eventually relapsed (median 3.17 years, range 1.3 to 11.3, p=0.551). When we compared the reduction of PRAME expression with that of PML-RARA expression from diagnostic to post-induction samples, a strong correlation was observed between the levels of expressions (Pearsons correlation coefficient of 0.689, p<0.001). We also analyzed both MRD markers in samples from patients who relapsed, finding a similar expression patterns between PRAME and PML-RARA in all of them. The evolution of these two markers is illustrated in Figure 4 (A–E) which shows five representative patients who eventually relapsed, together with one case who remained in continuous complete remission (F). In four relapsed patients, all the samples taken within 6 months before relapse showed an increase in at least one of the two markers to above 10 normalized copy numbers or 10 RU. The fifth patient (Figure 4E) was the only case who relapsed with no PRAME expression or PML-RARA increase (false-negative case). None of the three patients in continuous complete remission with a sample false-positive for MRD during maintenance and beyond (i.e. Figure 4F) showed either PRAME expression >10 RU or PML-RARA >10 normalized copy number in subsequent analyses.
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| Discussion |
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High PRAME levels were initially correlated with an advanced tumor stage and poor clinical outcome for several solid tumors such as non-small cell lung, breast and renal cell carcinoma, Hodgkins lymphoma, medulloblastoma and melanomas.1,2,10,11 By contrast, in hematologic neoplasias such as AML and acute lymphoid leukemia preliminary reports suggest that high PRAME expression is associated with a favorable prognosis.4,5,8 Only two previous studies have indicated that PRAME levels may be higher in AML patients with t(15;17) than in the rest of the AML subtypes; however, both studies only evaluated a limited number of t(15;17) AML cases using either conventional semi-qualitative RT-PCR (n=11)3 or gene expression arrays (n=12).30 When these latter patients were reanalyzed using the SYBR Green RQ-PCR approach, a correlation between high expression of PRAME (defined as the median expression across all AML samples) and t(15;17) AML was observed.4
However, the authors argued that this correlation might have been secondary to its correlation with favorable cytogenetics and they merely observed a trend towards longer overall survival in cases with higher PRAME expression.4 Based on a large cohort of APL patients, our data demonstrate that PRAME expression is an independent prognostic factor in APL since its over-expression is associated with prolonged RFS. Moreover, PRAME level contributes to defining two prognostic sub-groups within low-risk APL patients according to whether their WBC count is above or below 10x109/L.26–29
The biological explanation of why high PRAME expression is associated with a better prognosis is unclear. PRAME has been described to be a repressor of retinoic acid signaling, capable of inhibiting retinoic acid-induced differentiation, growth arrest and caspase-dependent apoptosis in F9 mouse embryonic carcinoma cells.31 Knock-down of PRAME by RNA interference in the retinoic acid-resistant A375 human melanoma cell line restores both retinoic acid receptor signaling and sensitivity to the antiproliferative effects of retinoic acid.31 However, some authors have shown that this effect could be tissue-specific, since PRAME expression is not associated with down-regulation of retinoic acid signaling in cells from primary AML.32 Furthermore, Tajeddine et al.33 demonstrated that PRAME overexpression can induce caspase-independent cell death in CHO-K1 and HeLa cell lines. In addition, the repression of PRAME expression by a short interfering RNA increases the tumorogenicity of the K562 leukemic cell in BALB/c nude mice.33 These latter findings would be fully concordant with a presumed beneficial effect of PRAME expression in the prognosis of APL.
Traditionally, MRD in APL patients is evaluated using levels of PML-RARA.18,20,34,35 In the post-induction phase, about one half of the patients in complete remission after ATRA plus chemotherapy, remain positive for PML-RARA in the bone marrow and this evaluation is clinically not informative. By contrast, studies carried out after completion of consolidation treatment are extremely relevant since a positive PML-RARA test is strongly predictive of relapse.20,28,34,36 In our series, RNA levels of PRAME at diagnosis were relatively lower than those of PML-RARA, but the kinetics of both transcripts after therapy seemed to be similar. PRAME levels in both the post-induction and post-consolidation phase did not have any prognostic impact. By contrast, in follow-up samples during maintenance treatment and out of therapy, we observed that an increasing level of PRAME was associated with impending relapse.
Accordingly, our results show that APL patients with a PRAME level 10-fold higher than normal values during maintenance therapy and beyond are at high-risk of relapse. PRAME and PML-RARA expression are strongly correlated and results after therapy were concordant, since a result of >10 normalized copy number during this period was almost equivalent to an immediate relapse.20 However, it is unclear whether PRAME RNA levels give information additional to that provided by PML-RARA expression, suggesting that PRAME could be used only as a secondary marker during the follow-up of APL.
In conclusion, our data demonstrate that PRAME is a suitable indicator of prognosis in APL, since overexpression at diagnosis is associated with a better outcome and the levels were able to identify two subgroups with significantly different RFS within low-risk APL patients (i.e. those with a WBC<10x109/L).
| Acknowledgments |
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| Footnotes |
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CS and MCC participated equally in designing the study, carrying out all molecular studies and preparing the database for the final analysis; CS prepared the initial version of the paper; RG-S conceived the study, helped in the design of the work, reviewed the database and carried out the statistical analysis. He rewrote the paper and provided pre-approval of the final version; AB, MES and MA participated in the generation of the molecular results; FR, TB, JAQ, MJP and PG were the clinicians responsible for the patients and took care of administering the treatment protocols, taking samples and collecting clinical data; JFS-M and MG promoted the study and obtained financial support. Both were responsible for the group of researchers and were responsible for the most important revision of the draft article; MG gave final approval of the version to be submitted. The authors reported no potential conflicts of interest.
Received for publication April 11, 2008. Revision received July 2, 2008. Accepted for publication July 4, 2008.
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-positive acute promyelocytic leukemia. PETHEMA group. Blood 1999;94:3015-21.
C(T)) method. Methods 2001;25:402-8.[CrossRef][Web of Science][Medline]
transcript to stratify the risk of relapse in patients with acute promyelocytic leukemia. Haematologica 2007;92:315-22.This article has been cited by other articles:
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C. M. Santamaria, M. C. Chillon, R. Garcia-Sanz, C. Perez, M. D. Caballero, F. Ramos, A. G. de Coca, J. M. Alonso, P. Giraldo, T. Bernal, et al. Molecular stratification model for prognosis in cytogenetically normal acute myeloid leukemia Blood, July 2, 2009; 114(1): 148 - 152. [Abstract] [Full Text] [PDF] |
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