Multiple Myeloma |
1 Institute for Cancer Research, Section of Haemato-Oncology, London
2 Department of Medical and Molecular Genetics, Division of Genetics and Molecular Medicine, Kings College London, School of Medicine
3 Leukaemia Research Fund UK Myeloma Forum Cytogenetics Group, Wessex Regional Genetics Laboratory, Salisbury
4 Northern Institute for Cancer Research, Newcastle University, UK
Correspondence: Gareth Morgan, Brookes Lawley Building, Institute of Cancer Research, 15 Cotswold Road, Sutton, Surrey, SM2 5NG, UK., E-mail:Gareth.morgan{at}icr.ac.uk
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Design and Methods: The expression of MMSET was analyzed using a novel antibody. The involvement of MMSET in t(4;14) myelomagenesis was assessed by small interfering RNA mediated knockdown combined with several biological assays. In addition, the differential gene expression of MMSET-induced knockdown was analyzed with expression microarrays. MMSET gene targets in primary patient material was analyzed by expression microarrays.
Results: We found that MMSET isoforms are expressed in multiple myeloma cell lines, being exclusively up-regulated in t(4;14)-positive cells. Suppression of MMSET expression affected cell proliferation by both decreasing cell viability and cell cycle progression of cells with the t(4;14) translocation. These findings were associated with reduced expression of genes involved in the regulation of cell cycle progression (e.g. CCND2, CCNG1, BRCA1, AURKA and CHEK1), apoptosis (CASP1, CASP4 and FOXO3A) and cell adhesion (ADAM9 and DSG2). Furthermore, we identified genes involved in the latter processes that were differentially expressed in t(4;14) multiple myeloma patient samples.
Conclusions: In conclusion, dysregulation of MMSET affects the expression of several genes involved in the regulation of cell cycle progression, cell adhesion and survival.
Key words: MMSET, WHSC1, myeloma.
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The t(4;14) translocation leads to the simultaneous overexpression of two genes, FGFR3 and MMSET.2,3 While the role and mechanism by which FGFR3, a receptor tyrosine kinase promotes myelomagenesis has been shown in various in vitro and in vivo studies, the involvement of MMSET upregulation in t(4;14) myeloma is still poorly explored.4–10 Moreover, about 30% of MM tumors with the t(4;14) translocation have recently been reported to lack expression of FGFR3 due to the loss of der(14).11 Interestingly, the poor prognosis associated with the t(4;14) in such patients lacking FGFR3 expression remains unchanged, lending further support to a potential role for MMSET.5,11 MMSET has recently been shown to have histone methyltransferase activity and knockdown studies have demonstrated that MMSET upregulation contributes to cellular adhesion, clonogenic growth and tumorigenicity.12 Despite these studies, the genes that are directly or indirectly regulated by MMSET and the mechanisms by which MMSET promotes t(4;14) MM remain unknown.
In this study, using RNAi mediated knockdown and overexpression of the MMSET isoform, REIIBP combined with global expression arrays on myeloma cell lines and patient samples, we have identified genes involved in cell cycle progression, cell adhesion and regulation of apoptosis that are differentially expressed by MMSET in t(4;14) MM. This study significantly sheds light on our better understanding of the molecular mechanisms by which MMSET promotes t(4;14) myelomagenesis.
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Genome-wide expression arrays
For expression arrays, 100 ng of total tumor RNA was amplified using the 2-cycle target labeling kit (Affymetrix) and as specified by the manufacturers instructions. Amplified cRNA (15µg) was hybridized to the Human genome U133 Plus 2.0 arrays as described.13,14 All samples were analyzed with dCHIP 2006 (www.dchip.org).15 In addition, functional clustering analysis was performed using DAVID Bioinformatics Resource 2007 (http://david.abcc.ncifcrf.gov).16
Comparison of expression array samples
MMSET knockdown samples were compared to control samples using dCHIP, for each cell line. In addition, patient samples (n=231) were used to compare those with and without a t(4;14) translocation (Online Supplementary Appendix).
Multiple myeloma cell lines and cell culture
All cell lines were acquired from either ATCC or DSZM, with the exception of KMS-11, which was kindly provided by Dr. Otsuki (Kawasaki Medical School, Japan) (Online Supplementary Appendix).
Nuclear-cytosol extraction and Western blotting analysis
The cytosolic and nuclear fractions of MM cell lines were isolated and Western blotting analysis performed (Online Supplementary Appendix).
MMSET knockdown and REIIBP cloning
MM cell lines were permeabilized to siRNAs using streptolysin-O (SLO) as described previously17–19 (Online Supplementary Appendix).
Cell proliferation assay
Cell proliferation was assessed using the CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay (Promega, UK) (Online Supplementary Appendix).
Statistical analysis
Statistical significance was determined by the two-way ANOVA test and Pearsons correlation using GraphPad Prism version 4.00 for Windows (GraphPad Software, California, US). The minimal level of significance was p<0.05.
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Figure 1. MMSET gene diagram and predicted expressed variants. (A) MMSET gene diagram depicting the location of MB4-1, MB4-2 and MB4-3 t(4;14) breakpoints including the breakpoints of some of the cell lines used in this study. Exons and introns are represented by boxes and spaces between boxes respectively. Transcription start codons are represented by solid/dotted arrows. The location of the siRNAs used in this study are represented by the thin black lines. (B) MMSET predicted protein variants.5 Shaded boxes represent the protein domains predicted by SMART and the solid dark line represents the epitope recognized by the antibody used in this study. PWWP-proline-tryptophan-tryptophan-proline domain; HMG-High mobility group domain and PHD-Plant homeodomain. (C) Western blotting analysis of the MMSET isoforms expressed in myeloma cell lines using the 5306 antibody. (D) Cellular localization of MMSET isoforms in t(4;14)-positive myeloma cell lines. The nuclear (N) and cytosol (C) fractions are depicted.
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-tubulin (control for cytosolic fraction) for each cell line tested indicate that the two fractions were successfully purified with minimal cross-contamination (Figure 1D). These data clearly demonstrate that different MMSET isoforms localize to different cellular compartments. In addition, these data suggest that the MMSET II, MB4-2II, MB4-3II and REIIBP, despite sharing the C-terminal end, may have different biological roles in t(4;14) myeloma.
MMSET knockdown affects cell proliferation, cell cycle and apoptosis
In order to demonstrate the involvement of MMSET upregulation in the pathogenesis of t(4;14) MM we knocked down MMSET expression using specific siRNAs. MMSET knockdown was initially optimized in three myeloma cell lines, RPMI8226, JIM-3 and H929 using the streptolysin-O method.19 We found that two siRNAs, 273 and 490, designed within exons 23 and 24 of MMSET respectively reduced the expression of MB4-2II and MB4-3II isoforms by greater than 90% in the t(4;14)-positive cell lines JIM-3 and H929 in relation to the negative control siRNA (Figure 2A). The expression of REIIBP was not affected by the knockdown, this finding was expected as REIIBP has an extended half-life of 65 hours compared to four hours for MMSET II, MB4-2II and MB4-3II isoforms (data not shown).
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Figure 2. (A) Knockdown of MMSET expression in JIM-3 and H929 human MM cell lines. MMSET was knocked down by transfecting 273 and 490 siRNAs using SLO-permeabilization. MMSET knockdown was assessed at 48h post-transfection by Western blotting analysis. Detection of -tubulin expression was used to ensure equal loading. (B) Knockdown of MMSET affects proliferation in cells with the t(4;14) translocation. The effect of MMSET on JIM-3 and H929 cells, both of which carry the t(4;14) translocation and RPMI8226 proliferation was assessed by exposing cells to SLO only, SLO with Neg CTL siRNA, 273 siRNA and 490 siRNA. Growth was assessed at 0, 24, 48 and 72 hours by CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay. Values represent mean ± SD of three independent experiments. ** represents p<0.05, two way ANOVA test. (C) Knockdown of MMSET affects cell cycle of human MM cells carrying the t(4;14) translocation. The effect of MMSET knockdown on JIM-3, H929 and RPMI8226 cell cycle was assessed by exposing cells to SLO only, SLO with Neg. CTL siRNA and 273 siRNA for 48 hours. Cell cycle profile was evaluated by flow cytometry using propidium iodide. The data is a representation of three independent experiments.
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Figure 3. (A) The effect of MMSET knockdown on JIM-3 and H929 apoptosis was assessed by exposing cells to SLO only, SLO with Neg. CTL siRNA, 273 siRNA and 490 siRNA for 48 h. Apoptotic cells were identified by annexin-V by flow cytometry. Data represents three independent experiments. MMSET knockdown induced apoptosis via the intrinsic pathway. (B) Genes affected by the MMSET deregulation. Venn diagram showing the probesets that overlap among MMSET-suppressed JIM-3 and H929 cells plus those in RPMI8226-REIIBP cells and of t(4;14)Pos tumor samples. The genes corresponding to the probe sets are in brackets. (C) Overall survival comparison of t(4;14)Pos patients with and without FGFR3 expression. (D) Correlation of MMSET with DSG2 and ADAM9 levels in patient samples (Pearsons correlation, p<0.05). (E) Correlation of MMSET with DSG2 levels using the GSE2658 series deposited at the Gene Expression Omnibus (Pearsonss correlation, p<0.05).
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Table 1. List of genes associated with the regulation of cell cycle progression, whose expression changes with MMSET knockdown.
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Table 2. List of genes associated with apoptosis deregulated by the MMSET knockdown.
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In order to determine potential MMSET targets and understand their relevance in patient samples, we identified genes that were significantly deregulated in both the cell lines and in patient samples carrying the t(4;14) translocation (average fold difference greater than 1.2; p<0.05) (Figure 3C). Total RNA was extracted from CD138+ selected cells from 37 t(4;14)-positive myeloma samples, as well as from 194 CD138+ selected t(4;14)-negative MM samples. In addition, as part of this analysis, REIIBP isoform was cloned and over-expressed in the t(4;14) negative cell line RPMI8226 (Online Supplementary Figure S1), followed by total RNA extraction. As a consequence of this analysis we identified 73 genes that were differentially expressed in both the t(4;14)-positive series and by MMSET knockdown and REIIBP upregulation in cell lines (Online Supplementary Table S2). Of these, we identified genes involved in cell cycle regulation (CCND2, CCNG1, GAS1 and LOH11CR2A), cell proliferation (MYBL1, LIFR and PBX1), cell adhesion (ADAM9 and DSG2) chromatin structure/DNA packaging (HMGB1, SATB1, HIST3H2A, HIST1H3A, HIST1H4A and WHSC1) (Table 3). Interestingly, from the 389 genes previously identified as being regulated by the MMSET knockdown, only 68 (17.5%) were found to be differentially expressed in t(4;14)-positive patient tumor samples. These data suggest that at least 82% of the genes differentially expressed by MMSET suppression may be either indirect targets of MMSET or are regulated as a consequence of the suppression of proliferation, survival and cell cycle progression. Surprisingly, of the 186 genes identified to be differentially expressed by the REIIBP upregulation only 5 genes (CD9, MYO1E, HNRPA3, ZNF677 and C3orf14) were found to be differentially expressed in t(4;14) positive tumor samples (Online Supplementary Tables S2 and S3).
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Table 3. Differentially expressed genes in both cell lines and patient samples carrying the t(4;14) translocation.
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Using a novel antibody that recognizes an epitope at the C-terminal end of MMSET, we found that MMSET II, MB4-2II, MB4-3II and REIIBP isoforms are expressed and up-regulated in t(4;14)-positive human cell lines. Unexpectedly, MMSET II and REIIBP were found to be expressed in the RPMI8226 cell line, which does not carry the t(4;14) translocation; however they were expressed at a much lower level when compared with cells harboring the translocation. This finding suggests that MMSET isoforms are expressed in myeloma cells and are up-regulated as a consequence of the t(4;14) translocation. In addition, we demonstrate that MMSET isoforms expressed in t(4;14)-positive MM cell lines are predominantly nuclear, a finding that is in concordance with recent reports.12 We suppressed the expression of MMSET using siRNAs in t(4;14)-positive cell lines and demonstrate that cell proliferation, cell cycle progression and apoptosis were affected. These data suggest that MMSET upregulation as a result of t(4;14) translocation is an important event in pathogenesis of t(4;14) MM, which is consistent with two recent reports.12,21 A key observation is that transfection of MMSET into the t(4;14)-negative RPMI8226 cell line did not effect cell proliferation, cell cycle or apoptosis, demonstrating that the low expression level of MMSET in such a cell line has little or no involvement in key cellular processes.
In order to gain further insight into the pathogenic mechanisms underlying MMSET deregulation we determined the global transcriptional downstream effect of MMSET knockdown in t(4;14)-positive cell lines, as well as by comparing these results with over-expression of REIIBP in t(4;14)-positive cells. In consonance with the cell biology outcome occurring as a result of MMSET knockdown, we identified key genes differentially expressed by the MMSET suppression involved in cell cycle regulation, apoptosis and cell adhesion processes.
Among the cell cycle genes, CCND2 was identified as being up-regulated in the t(4;14) subset and found to be down-regulated by the MMSET knockdown. In addition, among the genes that regulate cell cycle progression, several key players involved in cell cycle surveillance (CHEK1, CDC25A, CCNG1, LOH11CR2A and BRCA1), centriole biogenesis (PLK4) and chromosome segregation (AURKA) were identified and shown to have decreased expression levels upon MMSET siRNA treatment. AURKA siRNA targeting was recently shown to induce apoptotic cell death in myeloma cell lines.26 This report suggests that the decreased expression of AURKA may contribute to the enhanced apoptosis induced by MMSET knockdown.
The role of CHEK1, CDC25A, CCNG1, BRCA1, LOH11CR2A, PLK4 and AURKA in cell cycle regulation combined with CCND2, a G1-S transition regulator, and their decreased transcript levels are consistent with the effects of MMSET knockdown on cell cycle progression of t(4;14)-positive cells.
In addition to the affect on cell cycle progression, MMSET knockdown induced apoptosis in t(4;14)-positive cells. Our expression array data demonstrate that MMSET knockdown up-regulated the expression of several genes, such as CASP1, CASP4 and FOXO3A, whose overexpression triggers programmed cell death in human cells.27,28 In addition, FOXO3A responds to cellular stress by inducing cell cycle arrest, repair of damaged DNA and apoptosis.29–31 In myeloma cells, FOXO3A is a direct target of the antiapoptotic AKT of the PI3K pathway that plays an important role in the survival of myeloma cells by preventing the nuclear translocation and activation of pro-apoptotic proteins such as Bim and Fas ligands.32
Further to the effect of MMSET suppression on cell cycle progression and apoptosis, cell adhesion was also shown to be affected.12 We observed that expression of cell adhesion genes decreased with MMSET knockdown including ADAM9 and DSG2. ADAM9 is expressed in myeloma cells and has been shown to promote cell adhesion by interacting with
vβ5 integrin on osteoblasts stimulating IL6 production.33,34 Whereas the cadherin family member, desmoglein 2 (DSG2), a component of cell-cell adhesion in desmosome formation is associated with cell proliferation, activation of PI3K/AKT and NF-
B signaling pathways in keratinocytes.35 DSG2 has been previously reported to be differentially expressed in patient samples with t(4;14).22 The downregulation of ADAM9 and DSG2 by the MMSET knockdown suggests that upregulation of MMSET promotes cell-stroma and cell-osteoblast interaction, possibly leading to the activation of several paracrine and signaling pathways enhancing cell survival and cell adhesion mediated drug resistance (CAMDR) to conventional therapy, therefore affecting the clinical outcome.
Further to identify genes deregulated in cell lines we have also identified genes that are differentially expressed by MMSET in patient samples. Of the 389 genes shown to be differentially expressed by the MMSET knockdown in myeloma cell lines, 17.5% were expressed in t(4;14) tumor samples, suggesting that these may be direct targets of MMSET. From these we have identified genes consistently deregulated affecting cell cycle (CCND2, CCNG1, GAS1 and LOH11CR2A), cell adhesion (ADAM9 and DSG2) and cell proliferation (MYBL1 and LIFR), which are inversely expressed in tumor samples when compared to MMSET knockdown cell lines, making them excellent targets for future analysis. Upregulation of LIFR and MYBL1 in t(4;14) tumors and their decreased expression by the MMSET knockdown suggest that MMSET is involved in the IL6 signaling pathway and proliferation of t(4;14) myeloma cells. MYBL1 is a key regulator of gene transcription, cell growth and differentiation that is expressed in germinal center B cells and its expression is suppressed towards either memory or plasma cells.36 Whereas, LIFR is an important component of the IL6R
JAK/STAT
RAS/MAPK signaling pathway regulating cell cycle progression in myeloma cells.37,38
Our data as a whole suggest that MMSET is implicated in t(4;14) pathogenesis, by promoting cell cycle progression through the regulation of key cell cycle regulators cell adhesion. Cell adhesion enhanced by MMSET upregulation can activate paracrine and signaling pathways enhancing t(4;14) myeloma cell survival and CAMDR to conventional therapy, providing a possible answer for why the myeloma patients with t(4;14) have a poor clinical outcome.
JLRB: designed, performed, collected, analyzed the data and wrote the paper; BW, NJMB: analyzed the data; FMR: collected the data. NJD, MJ, AA, DG, FED: wrote the paper; GJM: designed and wrote the paper. The authors reported no potential conflicts of interest.
Received for publication May 30, 2008. Revision received September 2, 2008. Accepted for publication September 23, 2008.
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