Cell Therapy and Immunotherapy |
1 Department of Immunology, Division of Infection & Immunity, University College London, Royal Free Hospital, Rowland Hill Street, London, UK
2 Department of Hematology and Oncology, Johannes Gutenberg University, Mainz, Germany
Correspondence: Shao-An Xue/Hans Stauss, Department of Immunology, UCL Medical School, Royal Free Hospital, Rowland Hill Street, London NW3 2PF, UK. E-mail: s.xue{at}medsch.ucl.ac.uk/h.stauss{at}medsch.ucl.ac.uk
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Design and Methods: We generated a panel of retroviral constructs containing unmodified or codon-optimized WT1-T-cell receptor
and β genes, linked via internal ribosome entry sites or 2A sequences, with or without an additional inter-chain disulfide bond in the T-cell receptor constant domains. These constructs were functionally analyzed in vitro, and the best one was tested in an autologous primary leukemia model in vivo.
Results: We identified a WT1-T-cell receptor construct that showed optimal tetramer staining, antigen-specific cytokine production and killing activity when introduced into primary human T cells. Fresh CD34+ cells purified from a patient with leukemia were engrafted into NOD/SCID mice, followed by adoptive immunotherapy with patients autologous T cells transduced with the WT1-T-cell receptor. This therapeutic treatment evidently decreased leukemia engraftment in mice and resulted in a substantial improvement of leukemia-free survival.
Conclusions: This is the first report that patients T cells, engineered to express the WT1-T-cell receptor, can eliminate autologous leukemia progenitor cells in an in vivo model. This study provides a firm basis for the planned WT1-T-cell receptor gene therapy trial in leukemia patients.
Key words: WT1, TCR, gene therapy, immunotherapy, leukemia.
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In the past years our group has focused on developing adoptive T-cell therapy approaches for the treatment of WT1-expressing malignancies. We used the allo-restricted approach to isolate from healthy donors high avidity CTL specific for the WT1-derived peptide pWT126 presented by HLA-A2 class I molecule.25 We isolated the T-cell receptor (TCR) genes and demonstrated that retroviral TCR gene transfer can redirect the specificity of primary human T cells. Functional analysis of the redirected T cells demonstrated that they displayed cytotoxicity and produced cytokines in a pWT126-specific fashion. The redirected T cells were able to kill fresh leukemia CD34+ cells in vitro, and prevent engraftment of a leukemia cell line, BV173, in non-obese diabetic-severe combined immunodeficient (NOD/SCID) mice.26
The goal of this study was to develop a safe and efficient retroviral WT1-TCR construct, and validate it in an in vivo autologous primary leukemia model for the planned clinical phase I/II trial of leukemia. The retroviral vectors used in our previous studies contained a post-transcriptional regulatory element (PRE) of the woodchuck hepatitis virus, which has been implicated in causing transformation in animal models.27 Here, we explored to what extent the PRE element is necessary for efficient TCR gene transfer. To enhance TCR expression, we also used codon optimization and introduction of an inter-chain disulfide bond between the WT1-TCR
and β constant domains, which also reduces the risk of mis-pairing between the WT1-TCR and endogenous TCR chains.28,29
With our previous vectors, freshly transduced T cells contained only low frequencies of WT1-specific T cells, necessitating antigen-driven in vitro expansion. Prolonged in vitro culture is associated with the differentiation of transduced cells into end-stage effector T cells that are functionally impaired when adoptively transferred into recipients.30 Therefore, in this study we aimed to develop a WT1-TCR construct that can achieve high transduction efficacy and generate a high frequency WT1-specific CTL, which will allow us to adoptively transfer freshly transduced T cells. Finally, we designed experiments to test the therapeutic efficacy of WT1-TCR gene transfer in an autologous setting. We were able to purify sufficient numbers of leukemia CD34+ cells and T lymphocytes from a patient with chronic myeloid leukemia in blast crisis and demonstrated that introduction of the WT1-TCR into the patients T cells enabled rejection of autologous leukemia progenitor cells in immunodeficient NOD/SCID mice.
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1.5-MP71 and Vβ2.1-MP71, have already been described.26 To construct a single vector expressing both TCR
and β chains, the coding sequences of the WT1-TCR Vβ2.1 and V
1.5 were amplified by high fidelity polymerase chain reaction and cloned into the original full length-PRE-containing pMP71 vector (WT1-TCR-PRE, Figure 1A). The insertion of Vβ2.1 was through Not1 at the 5'-end, and Sal1 at the 3'-end; and the insertion of V
1.5 was via Nco1 at the 5'-end, and EcoR1 at the 3'-end. TCR Vβ2.1 and V
1.5 were linked via an internal ribosome entry site (IRES). To make a short PRE-vector expressing the TCR Vβ2.1 and V
1.5 (WT1-TCR-sPRE, Figure 1B), the whole TCR cassette Vβ2.1-IRES-V
1.5 was amplified by polymerase chain reaction and transferred into a truncated short-PRE vector via Not1 at the 5'-end and EcoR1 at the 3'-end. The
PRE vector expressing the Vβ2.1-IRES-V
1.5 cassette (WT1-TCR-
PRE, Figure 1C) was constructed by removing the whole PRE element from the original PRE-containg vector via EcoR1 restriction. To make a codon-optimized WT1-TCR, the coding sequences of the Vβ2.1 and V
1.5 were synthesized by Geneart (Germany) according to optimized codon usage, and then assembled into the
PRE-MP71-vector (WT1-Opt-TCR, Figure 1D). WT1-MuR-TCR was constructed by mutating the ATG codon at the end of the IRES into ATC (Figure 1E) so that the translation of V
1.5 initiated exactly from the ATG codon at the beginning of the TCR-V
1.5 sequence. To make a TCR with an additional inter-chain disulfide bond in the constant domains, the cysteine molecule was introduced into both TCR
and β chains as described previously,29 then the WT1-TCR
and β genes were linked via a viral p2A sequence,31 and the whole cassette V
1.5-p2A-Vβ2.1 was then cloned into the
PRE-MP71-vector (WT1-SS-TCR, Figure 1F). The control Epstein-Barr virus (EBV)-TCR construct was described previously.32
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Figure 1. Development of a WT1-TCR construct for clinical trial application. (A). The WT1-TCR Vβ2.1 and V 1.5, previously cloned in two separate vectors, were linked together with an IRES sequence and transferred into one single vector with the full length post-transcriptional regulatory element (TCR-PRE). To minimize the oncogenic potential of this woodchuck hepatitis virus-derived PRE, the X protein coding sequence was deleted by shortening the PRE (B), or the PRE sequence was removed completely in the TCR construct (C). To improve TCR gene expression, the wild-type TCR sequence was codon-optimized (indicated by gray background) to generate the Opt-TCR construct (D). To initiate the translation of V 1.5 at exactly the start codon, an ATG codon within the IRES sequence was mutated into ATC to generate the MuR-TCR construct (E). To reduce the risk of mis-pairing, an extra inter-chain disulfide bond was introduced into the TCR constant domains to generate the SS-TCR, and the porcine teschovirus 2A sequence was used to link the TCR and β genes to favor equimolar expression of the modified TCR chains (F).
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Intracellular cytokine detection assays
Assays were performed in 96-well round-bottom plates in which 2x105 TCR-transduced T cells were incubated with 2x105 T2 stimulator cells coated with 100 µM relevant (pWT126: RMFPNAPYL) or irrelevant (pCLG: CLGGLLTMV) peptide in 200 µL of culture medium containing brefeldin A (Sigma-Aldrich) at 1 µg/mL. After incubation for 18 h at 37°C with 5% CO2, the cells were first stained for surface CD8 and then fixed, permeabilized, and stained for intracellular interferon-
, interleukin-2 and tumor necrosis factor-
using the Fix & Perm kit (Caltag) according to the manufacturers instructions. Samples were acquired on a LSR II flow cytometer and the data were analyzed using FACSDiva software (BD Biosciences).
Expansion of T-cell receptor-transduced T cells
TCR freshly transduced bulk T cells were either used directly in functional assays or expanded by antigen-specific stimulation as described previously.26
Cytotoxic T lymphocyte assays
CTL assays were performed as described elsewhere.26 Briefly, 106 T2 cells were incubated at 37°C for 1 h in 200 µL assay medium (RPMI 1640 containing 5% heat inactivated fetal calf serum) with 100 µM synthetic peptides (pWT126, pCLG or pWT235: CMTWNQMNL). Tumor cells or peptide-coated T2 cells were then labeled with 51chromium for l h, washed, and added to serial 2-fold dilutions of effector cells in round-bottomed, 96-well plates to obtain a total volume of 200 µL/well. Assay plates were incubated at 37°C in 5% CO2. After 4 h, 50 µL of supernatants were harvested, diluted with 150 µL of scintillation fluid, and the radiation counted using a Wallac 1450 Microbeta Plus counter. The specific killing was calculated by the equation:
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Purification of hematopoietic CD34+ cells
Informed consent was obtained before collecting normal CD34+ cells from bone marrow of adult healthy donors and leukapheresis products of mobilized stem cell donors. As a source of leukemic CD34+ cells, bone marrow or peripheral blood was obtained from patients with acute or chronic myeloid leukemia. Samples were diluted 1:2 in RPMI medium and enriched for mononuclear cells by density-gradient centrifugation (Lymphoprep 1.077 g/mL; Nycromed Pharma AS, Oslo, Norway). CD34+ cells were isolated from the recovered mononuclear fraction by magnetic bead selection using a CD34 microbead kit (Miltenyi Biotec, Germany) according to the manufacturers instructions. The purity of the cell population ranged from 80% to 95% as determined by FACS analysis using anti-human CD34-phycoerythrin monoclonal antibody (Miltenyi Biotec, Germany).
In vivo inhibition of engraftment of CD34+ leukemia progenitor cells
The in vivo animal experiments were carried out in accordance with University College London and national guidelines on the care and use of laboratory animals. CD34+/CD19+ leukemia progenitor cells were isolated from a leukapheresis sample taken from a patient with chronic myeloid leukemia in lymphoid blast crisis. Purified primary leukemia progenitor cells (3x106) were injected intravenously into each of the 3-month old immunodeficient NOD/SCID mouse. On the following day, the mice were randomly divided into a treatment group and a control group. Each mouse in the treatment group was injected intravenously with 20x106 autologous T cells transduced with WT1-SS-TCR, while each mouse in the control group was given an intravenous injection of 20x106 autologous T cells transduced with EBV-TCR. The mice were given irradiated food and water, and monitored for leukemia burden. When the mice showed signs of ill health, they were sacrificed and bone marrows were harvested for FACS analysis to detect engrafted human leukemia cells using triple staining with anti-human HLA-class I-fluoroscein isothiocyanate, CD19-allophycocyanin and CD8-phycoerythrin monoclonal antibodies (BD Biosciences).
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and β genes into doubly infected T lymphocytes.26 These vectors contained the PRE derived from the woodchuck hepatitis virus, which was thought to be required for efficient TCR gene transfer and expression.34 As recent studies suggested that this PRE might be oncogenic,27,35 we aimed to modify or remove it from our vectors. We first assembled a retroviral construct containing the full-length PRE with the WT1-TCR
and β chains linked by an IRES sequence (Figure 1A). To reduce the potential oncogenic activity of this PRE, we then generated a vector variant containing a truncated PRE sequence (Figure 1B) that was unable to encode the X-protein, which was implicated in the transforming activity of PRE.27 In order to abolish the oncogenic potential of this PRE completely, we also deleted the whole PRE sequence from the vector, and generated a WT1-TCR retroviral construct without the PRE (Figure 1C). When these three vector variants containing the same wild-type WT1-TCR were transduced into Jurkat-76 cells, the transduction efficiency and the TCR expression levels were similar, as determined by the percentage of Jurkat-76 cells expressing the Vβ2.1 chain of the WT1-TCR and the mean fluorescence intensity (MFI) of Vβ2 staining (Figure 2A). Similarly, transduction experiments with primary human T cells revealed that the average transduction efficiency and Vβ2 expression levels were again similar for the three vector variants (Figure 2B). These experiments clearly demonstrated that removal of the PRE did not impair either transduction efficiency or WT1-TCR expression level. The PRE-deleted vector variant was, therefore, used for all subsequent experiments.
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Figure 2. The PRE is not required for efficient TCR gene transfer and expression. (A) The PRE-variant vectors (indicated at the top) were transduced into Jurkat-76 cells. WT1-TCR expression was detected by Vβ2 antibody staining. Mock transduced (Mock-td) Jurkat-76 cells were stained as a control. The percentage of TCR-Vβ2 expressing cells is shown, and the level of Vβ2 expression is indicated by mean fluorescent intensity (MFI). (B) The PRE-variant vectors (indicated at the top) were transduced into peripheral blood derived human T lymphocytes. WT1-TCR expression was detected by Vβ2 antibody staining. Mock transduced lymphocytes were stained to determine the level of endogenous Vβ2 expression. The percentage of Vβ2 expressing cells is shown, and the level of Vβ2 expression is indicated by the MFI. The experiment was repeated three times with similar results, and a typical example is shown here.
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1.5 and Vβ2.1 gene sequences. Rare codons were replaced by codon sequences that are frequently used in humans to facilitate t-RNA binding and protein translation. Since the generic IRES sequence separating the TCR-β and the TCR-
genes contains an ATG start codon 12 nucleotides upstream of the ATG start codon of the TCR-
chain (Figure 1D), this may result in the production of a TCR-
chain with an N-terminal extension of four amino acids derived from the IRES element, which could impair the endoplasmic reticulum import of the TCR-
chain. To test directly whether the ATG in the IRES element can impair TCR expression, we generated a vector variant in which the ATG was mutated to ATC (Figure 1E). Finally, to reduce the mis-pairing between the introduced WT1-TCR and endogenous TCR chains, we introduced an extra inter-chain disulfide bond between the WT1-TCR
and β chains, and linked the two genes with a viral 2A sequence in an attempt to achieve equimolar expression of the cysteine-modified TCR chains (Figure 1F). We used the Jurkat-76 cell line to compare the transduction efficiency and expression of the retroviral vectors carrying the wild type WT1-TCR sequence (Figure 1C), or the three codon-optimized variants (Figure 1D–F). As shown in Figure 3A, Jurkat-76 cells were efficiently transduced by all the constructs (44–56% Vβ2+ cells); analysis of the MFI of Vβ2 indicated that the level of expression of the codon-optimized TCR containing the additional disulfide bond and the 2A sequence (SS-TCR) was approximately 1.4-fold that of the wild-type TCR. The levels of expression of the codon-optimized IRES variants (Opt-TCR and MuR-TCR) were higher than that of the non-codon-optimized IRES construct (WT-TCR), but lower than that of the codon-optimized 2A construct (SS-TCR) (Figure 3A).
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Figure 3. Expression of WT1-TCR variants in Jurkat-76 cells and human peripheral blood mononuclear cells (PBMC). The WT1-TCR variants (indicated at the top) were transduced into Jurkat-76 cells (A) and into human PBMC (B,C), and their expression was analyzed by anti-CD8, Vβ2 antibody and pWT126 tetramer staining (C). Mock transduced cells were also stained as a control. The percentage of Vβ2 expressing cells is shown, and the levels of Vβ2 expression in Jurkat 76 cells are indicated by mean florescent intensity. The experiment was repeated more than three times with similar results, and a typical example is shown here.
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We next determined the percentage of antigen-responsive T cells immediately after transduction. Using our previously published vector system this was usually below 1%, necessitating antigen-driven expansion to increase the frequency of WT1-specific T cells.26 In contrast, transduction of the TCR constructs developed in this study into primary T cells produced a respectable frequency of antigen-specific T cells. Figure 4A shows the frequency of interleukin-2 and interferon-
-producing T cells in the freshly transduced T cells when stimulated with pWT126 peptide or an EBV-derived control peptide (pCLG). Following transduction with WT1-SS-TCR, 24.6% of the CD8 T cells produced interleukin-2 and/or interferon-
after pWT126 peptide stimulation (Figure 4A). The frequency of antigen-responsive T cells was substantially lower after transduction with other WT1-TCR constructs (3.8–5.1% responsive cells). Figure 4B shows a summary of the ability of primary T cells transduced with the indicated TCR constructs to produce interferon-
, interleukin-2 or tumor necrosis factor-
, demonstrating again that the highest responses were seen with the SS-TCR. Finally, T cells transduced with the SS-TCR had the highest antigen-specific killing activity while maintaining the lowest background killing (Figure 4C).
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Figure 4. Antigen-specific responses of freshly transduced human T cells. The WT1-TCR constructs (indicated at the top) were transduced into primary human T cells and their functional activities were determined. (A). Antigen-specific interleukin-2 (IL-2) and interferon (IFN ) production was determined after overnight stimulation with specific pWT126 peptide or control pCLG peptide. Representative FACS plot data of intracellular IL2 and IFN staining are shown. (B). A summary of all three cytokines (including tumor necrosis factor- ; TNF ) produced by WT1-TCR freshly transduced T cells after stimulation with specific pWT126 or control pCLG peptide. (C). Antigen- specific killing activity of the indicated WT1-TCR variants against target cells coated with the relevant pWT126 peptide or a control pWT235 peptide. The experiment was repeated three times with similar results, and a typical example is shown here.
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Figure 5. WT1-SS-TCR engineered T cells can recognize endogenously processed tumor antigen and selectively kill autologous CD34+ leukemia progenitor cells in vitro. (A). WT1-SS-TCR transduced normal donor T cells killed K562-A2 tumor cells which endogenously express WT1. (B). WT1-SS-TCR transduced normal donor T cells can distinguish CD34+ leukemia progenitor cells from normal CD34+ stem cells or CD34– cells. CD34+ leukemia progenitor cells isolated from three patients with chronic myeloid leukemia (indicated as solid symbols) were killed, but not CD34–cells (from CML9) or CD34+ cells isolated from healthy donor (N8) or a cord blood (CB2) sample. (C). Patients (CML9) T cells were transduced with WT1-SS-TCR (indicated by diamonds ( ) or EBV-TCR ( ), and their cytolytic activity was tested in a 51Cr release CTL assay. Both TCR transduced patients T cells can recognize and kill their specific targets (solid symbols) but not control targets (open symbols). (D). WT1-SS-TCR transduced patients T cells can kill autologous CD34+ leukemia progenitor cells ( ), but not autologous CD34– cells ( ). EBV-TCR transduced patients T cells ( ) did not kill either target.
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Having shown that WT1-SS-TCR-transduced patients T cells were functionally active in vitro, we then explored whether they were able to inhibit the engraftment of autologous leukemia progenitor cells in the NOD/SCID mouse model. The mice were first injected intravenously with CD34+ leukemia progenitor cells isolated from the patient, then, 24 h later, with autologous T cells expressing the WT1-SS-TCR or the control EBV-TCR. As shown in Figure 6A, 80% of the mice treated with the control TCR died of leukemia within 12 weeks, while 80% of the WT1-SS-TCR treated mice survived. When mice died during the experiment or when they were killed at the end of the experiment (week 16), the bone marrow was harvested and stained with antibodies against human CD19 and HLA class I. As shown in Figure 6B, four out of five mice that were treated with the control EBV-TCR had human leukemia cells in the bone marrow. The one mouse in the control group whose bone marrow did not contain human leukemia cells was the animal that survived a long time (Figure 6A). In contrast, four animals treated with the WT1-SS-TCR had no detectable leukemia cells in the bone marrow (T2-T5). One mouse (T1) that died at 11 weeks (Figure 6A) had a small but detectable number of leukemia cells in the bone marrow. Together, these data indicate that patients T cells expressing the WT1-SS-TCR were able to protect against the growth of autologous leukemia progenitor cells in the majority of mice.
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Figure 6. WT1-SS-TCR engineered patients T cells can inhibit the engraftment of autologous leukemia CD34+ progenitor cells in the NOD/SCID mouse model. (A). WT1-SS-TCR transduced patients T cells significantly prolonged the survival of mice engrafted with autologous CD34+ leukemia progenitor cells. CD34+/CD19+ leukemia progenitor cells were isolated from a leukapheresis sample of a patient (CML9) with lymphoid blast crisis, and i.v. injected 3x106 into each NOD/SCID mouse. After 24 h, 20x106 autologous T cells transduced with WT1-TCR or control TCR were i.v. injected. Mice were monitored for leukemia burden, and were sacrificed when they showed signs of ill health. (B). Elimination of human leukemia progenitor cells in NOD/SCID mice by WT1-SS-TCR transduced autologous T cells. Engraftment of human leukemia progenitor cells was detected by FACS analysis of the harvested bone marrow from control (C) and treated (T) mice after staining with anti-human class I and CD19 antibodies.
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In preparation for clinical trials, a major goal of this study was to improve the expression and function of the WT1-TCR in gene-modified T cells. We took advantage of two modifications that were recently shown to improve TCR gene expression.28,39 Codon optimization leads to more efficient synthesis of TCR chains, and cysteine modification in the TCR constant domains enhances the correct pairing between the introduced TCR chains and reduces mis-pairing between the introduced and endogenous TCR chains. In addition, we linked the TCR
and β genes with a viral 2A element31 to favor equimolar expression of both TCR chains. Collectively, these modifications produced a new WT1-SS-TCR construct that was at least 5-fold more active than the other retroviral TCR constructs tested in this study.
In the planned clinical trial, we aim to use freshly transduced T cells to avoid the possible loss of functional plasticity that is associated with prolonged in vitro culture of T cells.30 The production of a high frequency of antigen-responsive T cells is a major advantage of the new SS-TCR construct. In this study, up to 25% of freshly transduced CD8 T cells were able to respond to WT1 antigen stimulation, which represents a high frequency that is desirable for our planned clinical trials.
It is possible that improving WT1-TCR function could increase the risk of T-cell attack of normal stem/progenitor cells expressing low levels of WT1. Using purified CD34+ cell populations we found that the T cells transduced with the new WT1-SS-TCR construct showed selective killing of CD34+ cells from leukemia patients but not of CD34+ cells from healthy donors. This suggests that the functionally improved T cells retain the ability to attack leukemic cells selectively.
We used the new WT1-SS-TCR construct to demonstrate that T cells from a patient with chronic myeloid leukemia can be redirected to attack autologous blast cells. To our knowledge, this is the first demonstration that TCR gene-modified patients T cells can eliminate autologous primary leukemia cells in an in vivo model of adoptive T-cell therapy.
Overall, this study demonstrates how combinations of vector and TCR modifications can improve the safety features of TCR gene transfer, while at the same time enhance the expression and function of the introduced TCR chains. This work provides the basis for the use of the WT1-specific SS-TCR in the planned clinical trials in patients with chronic and acute myeloid leukemias.
Funding: this study was supported by Leukemia Research, UK
The online version of this article has a supplementary appendix.
SAX and HJS designed the experiments, SAX, LG, ST, DPH, JZX, and RG performed experiments, RHV, EM and HJS analyzed the data, SAX and HJS wrote the paper.
EM and HJS are consultants for Cell Medica. EM received honoraria from Pfizer and Gilead. The other authors reported no potential conflicts of interest.
Received for publication February 5, 2009. Revision received June 12, 2009. Accepted for publication July 3, 2009.
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therapy on woodchuck hepatitis virus-induced hepatocarcinogenesis: possible benefit in female transgenic mice. J Hepatol 2001;34 4: 562–9.[CrossRef][Web of Science][Medline]Related Article
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